gene(s) site(s) genome coordinates site(s) sequence known or novel site q-value for E.coli or E.coli-S.typhi database search q-value with combined evidence from additional species mtlA/yibI 3769746-3769767 3769629-3769650 ttatgtgattgatatcacacaa aaatgtgacactactcacattt known 2.185202308065e-08 7.06793266615053e-13 yjcB/yjcC 4272748-4272769 aattgtgatatagttcacaaaa novel 2.837706787449e-05 8.10773367842571e-06 gcd/hpt 141284-141305 aattgtgatgacgatcacacat novel 0.0001015880032389 0.000215786437168992 b2146 2231941-2231962 atttgtgaatcttttcacagtt novel 0.0001079671386752 2.94455832750545e-05 fucA/fucP 2932050-2932071 2932090-2932111 ttatgtgactaccatcacttta taatatgacggcggtcacactt known 0.000117590129571 3.43763874863003e-05 proP 4327853-4327874 atgtgtgaagttgatcacaaat known 0.0002396131897682 0.00256810561152621 ygcW/yqcE 2898417-2898438 2898474-2898495 cactgtgattacgatcacatta ttgtgtgagagtaatcacgctt novel 0.000379141496264571 0.00016587440461575 flhD 1976480-1976501 ttgtgtgatctgcatcacgcat known 0.000924739118860667 0.000378302366806636 gapA/yeaA 1860569-1860590 aatcgtgatgaaaatcacattt novel 0.0009388762456002 9.49708860021198e-07 ycdZ 1099416-1099437 aagtgtgatctacgtcactcat novel 0.00097820368929 2.03032353204018e-05 tsr/yjiY 4589059-4589080 atatgtgattcatatcacatat novel 0.00133772652172527 0.00617131909037859 udp/ysgA 4013874-4013895 ttatgtgatttgcatcactttt known 0.00164933713350429 5.49268047988661e-07 ydeA 1614958-1614979 aaacgcgatccagatcacaaat novel 0.001684535429124 0.0036915635500186 b2248 2360285-2360306 2360344-2360365 ggatttgatgcgcttcacaatt atccgtgcgctgattcacaaat novel 0.00173528436407769 0.000805667740464643 glpA/glpT 2350502-2350523 aaatgtgaattgccgcacacat known 0.00173574458277 6.4569754092534e-10 mglB 2238617-2238638 atctgtgagtgatttcacagta novel 0.0018514093079545 2.52096708058804e-08 qseA/yhcR 3387118-3387139 ttatgtgatctaaatcactttt novel 0.00207128470407882 0.000243740035500815 tdcA/tdcR 3264767-3264788 3264872-3264893 atttgtgagtggtcgcacatat ttttttgacaaaaatcagggtt 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0.00282328604548826 b2343/fadL 2459057-2459078 aagtgtgatttcggtcacttat novel 0.0047435874797 0.00327565817736131 sbmC 2079356-2079377 gagtgcgagtctgctcgcataa novel 0.00566864941197724 0.00322334966563412 gntK 3575335-3575356 aaatttgaagtagctcacactt novel 0.006105306175302 0.00352229202421269 adhE/ychE 1297564-1297585 aaatttgatttggatcacgtaa novel 0.00726363519247059 2.74692679473582e-05 aer/ygjG 3216928-3216949 3216800-3216821 attgctgcgcaaatgcacgttt aattgcgatctaaatcaaatta novel 0.00733482212947161 0.000108235562350249 yeeF 2085098-2085119 2085321-2085342 ttacgcgacggttatcaccgta tattctgacaagcctctcattc novel 0.00740810839287273 0.0217014230336495 aroH 1786395-1786416 1786353-1786374 tatcgtgatgcgcatcacttcc aggtgtgacacacctcgcactt novel 0.0074876771977875 0.00261978776114506 b0822 859296-859317 atttgtgctctgcgtcacattg novel 0.00791029428185143 0.00461433833108 cdd 2229736-2229757 2229786-2229807 atttgcgatgcgtcgcgcattt taatgagattcagatcacatat known 0.0079843630447 6.94592883593318e-10 galP 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pth/ychH 1257909-1257930 atgtgcgggcgtgatcacaatt novel 0.0212962020899354 0.0638837958636756 ydaJ/ydaK 1402612-1402633 ctacgtgaaccgggtcacactt novel 0.0230810982294091 0.0955616819132279 purH/rrsE 223496-223517 4205452-4205473 ttgtgtgaagtgattcacatcc novel 0.0249585684599206 0.00744991890410198 yidA 3874615-3874636 atttttgagcggaatcgcgtta novel 0.0252371430485552 0.0195580563387823 sgcX 4529285-4529306 4529335-4529356 tcacgtgaacgttctcacaatt ttattccactcggctcacataa novel 0.0256330423355043 0.0190180636682774 yaeG 182354-182375 atctgtgaacttcaccacaact novel 0.0261068793489086 0.0584797566225687 glnA/yihK 4055704-4055725 4055862-4055883 caatttaaaagttggcacagat ctttgtgatcgctttcacggag novel 0.0281779356990084 0.00919764019824237 ompA 1019443-1019464 atgcctgacggagttcacactt known 0.029271529040321 0.0643045490384561 chpS/yjfA 4445937-4445958 4445847-4445868 aactctgctggcattcacaaat ttttgcgagacgactcgcattc novel 0.029313880816975 0.0217587568950742 kdgT 4099091-4099112 ttttgtgatcaatttcaaaata novel 0.029451259365416 0.022088444524062 bax/malS 3734974-3734995 ttttgcgataacccccacattt novel 0.0297325613702308 0.0703005989069721 dsdC/dsdX 2475713-2475734 2475743-2475764 aattgagatatggttcacttta tggagtgatttacatctaaaaa novel 0.0297372311239233 0.0509766598730769 rhaT/sodA 4098230-4098251 agatgtgaagcaaatcacccac known 0.0297452331817054 0.0435579515742907 xylA/xylF 3728507-3728528 ttttgcgagcgagcgcacactt novel 0.0298712339541039 0.000487100794899165 araB/araC 70158-70179 ttatttgcacggcgtcacactt known 0.0323747168773671 0.0153557599309634 rnk 643309-643330 gaatgtgacgcaaatcacttca novel 0.0324713833559268 0.137798039095835 ybiS/ybiT 855062-855083 855147-855168 aaatgtgatttcgtacacatct agatatgacaaaccgcgcatta novel 0.0326794359056296 0.143592101389818 frwC 4139962-4139983 4139907-4139928 agttatgaggcggatcgcattt atttgcgacgcgtctcacaaga novel 0.032951059313775 0.00538718809317662 otsB 1980480-1980501 aatggcgacccccgtcacactg novel 0.0337791781747952 0.0264497338538491 dctA 3681199-3681220 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b2450 2562444-2562465 ttttgtgatctgcgtcaatatt novel 0.039864274500375 0.0324319521358983 b2392/nupC 2510948-2510969 2510978-2510999 tcctgtgacaggcttcaaaaat aaacgagatctgacacacacta novel 0.0401157443727789 0.039440644526102 b2097/yegT 2176736-2176757 aaacttgaccgcgctaacattt novel 0.0429760673537143 0.0342410943143415 ycjM 1368098-1368119 ttatttgcgtcagctcacaaat novel 0.04302653536986 0.0341480439443333 fdrA/ylbC 545799-545820 ctgtgtgatattcatcacctta novel 0.0433320674928866 0.0344525454656557 ygeV/ygeW 3004116-3004137 3003939-3003960 atgtgtggggttgatcacaaat aaatgtgatatctcttccataa novel 0.0434158214112121 0.03438533055768 yeaQ 1877356-1877377 ctccgtgatgctcgtcacaaat novel 0.044825533176699 0.064487214711665 uxuA/gntP 4549019-4549040 tcttgtgatgtggttaaccaat known 0.0450570134366139 0.0312378806568812 ompF 986426-986447 aaatatgacggtgttcacaaag novel 0.0450755679064118 0.00165046348028596 araE 2980314-2980335 aattggaatatccatcacataa novel 0.0473410609501698 0.0386011727747538 aldA 1486144-1486165 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0.0703356079371699 b2448 2561441-2561462 ttttgtgatgcagatcgctttt novel 0.0593351778106552 0.0491634330431143 cpdB/cysQ 4434207-4434228 aattgtggcattcttcactgtt novel 0.0596001985382 0.032188275317958 b1729 1808868-1808889 atataagagccagctcacagtt novel 0.0596374215952308 0.0221225520383908 yjbA 4237839-4237860 aatatagatctccgtcacattt known 0.0596440117966116 0.0144163186374319 treB 4463834-4463855 aattgtgatcttcgctgcgttt novel 0.0596766469841345 0.00686407787472591 b2659 2786869-2786890 tttgttgcttttgatcacaata novel 0.0600109237225424 0.0502219077961702 ybfM 707378-707399 atatgtgcggttgctcatgttc novel 0.060053246504459 0.0195017797641714 ansB 3098851-3098872 3098801-3098822 ttttgttacctgcctctaactt taaattgtttaacgtcaaattt known 0.0604050030015122 0.0170289610523808 yihU/yihV 4071243-4071264 aaaagtgacggctgtcaatttt novel 0.0617039712026129 0.12652197421955 ylcE/ybcY 582053-582074 atttgtgaattaaatcaattat novel 0.0660934089728976 0.0578887099279862 ascF/ascG 2837370-2837391 tcaggtgaccggtttcacaaat novel 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