gene(s)	site(s) genome coordinates	site(s) sequence	known or novel site	q-value for E.coli or E.coli-S.typhi database search	q-value with combined evidence from additional species
purT/yebG	1928852-1928867  	acgcaaacgttttcgt 	known	0.0003165273573774	3.54362660642755e-12	
purE	552395-552410  	acgcaaccgttttcct 	known	0.0011602015192755	2.41648684047885e-10	
purL/yfhD	2693640-2693655  	acgcaaacggtttcgt 	known	0.001472611150686	4.92986761569794e-07	
codB	354064-354079  	acgaaaacgattgctt 	known	0.00170338588244314	0.000851692941221571	
purH/rrsE	4205218-4205233  	gcgcaaacgttttcgt 	known	0.001731228954455	1.06227288029121e-12	
cvpA	2428840-2428855  	acgcaaacgttttctt 	known	0.001895548232487	1.27923885126235e-16	
purM/upp	2619138-2619153  	tcgcaaacgtttgctt 	known	0.0019537010750595	4.42029997097784e-14	
yjcD	4275928-4275943  4275786-4275801 	agctaaacgtttgctt acgataacgtttgcgc	novel	0.0020750982952908	1.39161401908387e-09	
purC	2595792-2595807  	acgcaaacgtgtgcgt 	known	0.00343840342863333	1.23566946240957e-05	
pyrD	1003889-1003904  	cggaaaacgtttgcgt 	known	0.00515443986847636	0.000440116789454189	
sdaC	2925844-2925859  	acgcaaacgtttccct 	novel	0.005241781305306	0.00024286145864201	
pyrC	1121882-1121897  	aggaaaacgtttccgc 	known	0.00567351357235	0.000889621708681291	
gltS/yicE	3826504-3826519  	aagcaaacgtttgcca 	novel	0.00863404568928	9.35066306279386e-05	
glyA/hmpA	2683646-2683661  2683702-2683717  	aggtaatcgtttgcgt aagaaatccgtttccg 	known	0.00931666148355429	0.00198055895174075	
tsx	431376-431391  	acgcaatcgattacgt 	novel	0.014470755655616	0.0273320706480323	
ygeV/ygeW	3004071-3004086  	acgaaaacgtttggct 	novel	0.0434563212227625	0.0267423515217	
guaB/xseA	2632144-2632159  	atgcaatcggttacgc 	known	0.0754816220959412	9.76132129657597e-05	
yigJ	4005335-4005350  	ccgtaaacgtttcccc 	novel	0.0774240502945	0.186893681481314	
gcvT	3048778-3048793  	aagagaacgattgcgt 	known	0.0940870451959579	0.0214135861756629	
ycdO	1081417-1081432  	acgcaaactcttgctt 	novel	0.12035623711332	0.126022940353209	
ydcP	1504735-1504750  	gggaaaactatttcgc 	novel	0.135136031304857	0.0945952219134	
b1688/ydiJ	1766918-1766933  	agtaaatcgtttgcgt 	novel	0.151677776246609	0.240255158849788	
ascF/ascG	2837448-2837463  2837372-2837387  	gtgaaaccggtttctt aggtgaccggtttcac 	novel	0.152027365726364	0.10789038858	
ntpA	1946744-1946759  	acgaaatcattcgcgt 	novel	0.16878382047	0.37880523495598	
ylaD	479197-479212  	atgggaacgttctctt 	novel	0.17519811298704	0.00393702198763853	
carA	29415-29430  	gcgcaagcgttttcca 	known	0.1788259898425	0.00343987669758894	
yfjP	2765484-2765499  	gggaacacgttttccc 	novel	0.230889600791778	0.178114834896514	
yhhP/yhhQ	3606689-3606704  	acgcaatcgttaacct 	novel	0.239735351493857	0.185695892581986	
mdoG/ymdD	1108399-1108414  	gtgaaaacggttgcaa 	novel	0.271667662422	0.0745257553535223	
rplL	4178089-4178104  	acgcattcgcttacgt 	novel	0.2797818923354	0.133688737183666	
wecD	3972140-3972155  3972113-3972128  	gcgccatcgtgcgcat gggaaaacgccttctt 	novel	0.281357186203241	0.350402976860382	
asnW	2056188-2056203  	cagcaaacgatttcaa 	novel	0.286323945916125	0.234932468444	
b2340	2454889-2454904  	cggccaccgttttctt 	novel	0.295591253274909	0.579781767895014	
yfaD	2354777-2354792  	gcgtacacgattccgt 	novel	0.305016552210882	0.25926406937925	
yifK	3978419-3978434  	acgaaaacatttgcaa 	novel	0.377283101132167	0.513483252185868	
adiY	4335749-4335764  	atggcaacgttttcat 	novel	0.386220185970171	0.307220602476273	
ebgA	3220109-3220124  	cggcaatcgtttttgc 	novel	0.386603623778	0.335056473940933	
b2878	3013767-3013782  	agttaaacgattgcgt 	novel	0.3897610176213	0.338922624018522	
b2611/ffh	2745831-2745846  2745832-2745847  	gtggaaacggttggcc tggaaacggttggccg 	novel	0.392303447373158	0.635077111325192	
ppiA/yhfC	3490098-3490113  	ttgcaatcggttgcta 	novel	0.397354145686216	0.510612691363885	
ftsJ/yhbY	3325331-3325346  3325343-3325358  	acgcaattggttacga gcgtaaaaatttacgc 	novel	0.444954385390667	0.388850755918352	
purA	4402243-4402258  	aagcaaacggtgattt 	known	0.446868907953	0.305535378541754	
cytR	4122115-4122130  	ctgtaaccgttttcac 	novel	0.449068733442522	0.00110234149775595	
yieG/yieH	3894370-3894385  	agtttaacgttttcgt 	novel	0.451262927057745	0.00356276836728082	
b0309	323847-323862  	gggaacccgttttcag 	novel	0.453079769341535	0.382008432974235	
gidB	3921337-3921352  	aagcacccgcttacca 	novel	0.457802680515143	0.0692900379014282	
asnB	698476-698491  	gccaaatcgcttgcgc 	novel	0.466263393227561	0.492944009440429	
serA	3056510-3056525  	acgcaaacgttcatat 	novel	0.49565627081425	3.8919385706384e-05