gene(s)	site(s) genome coordinates	site(s) sequence	known or novel site	q-value for E.coli or E.coli-S.typhi database search	q-value with combined evidence from additional species
purT/yebG	1928852-1928867  	acgcaaacgttttcgt 	known	0.0003290593967583	4.89742285725115e-12	
purL/yfhD	2693640-2693655  	acgaaaccgtttgcgt 	known	0.0017500555660185	8.75636365148948e-07	
purE	552395-552410  	aggaaaacggttgcgt 	known	0.002078704594317	3.98179445191323e-10	
rrsE/purH	4205218-4205233  	acgaaaacgtttgcgc 	known	0.0022069104930132	0.000848811728082	
cvpA	2428840-2428855  	aagaaaacgtttgcgt 	known	0.003110443114896	2.03839054622182e-16	
purC	2595792-2595807  	acgcacacgtttgcgt 	known	0.005281937903255	1.44055999686599e-05	
yjcD	4275928-4275943  4275786-4275801 	agctaaacgtttgctt acgataacgtttgcgc	novel	0.00599137274652429	6.14068791366497e-09	
sdaC	2925844-2925859  	acgcaaacgtttccct 	novel	0.00626782398457091	0.000332530284390558	
purM/upp	2619138-2619153  	tcgcaaacgtttgctt 	known	0.006389837352366	1.64289943593503e-13	
pyrD	1003889-1003904  	cggaaaacgtttgcgt 	known	0.00709155655346667	0.00052471414160016	
codB	354064-354079  	acgaaaacgattgctt 	known	0.0073888129570125	0.00328391686978333	
b1657/purR	1735808-1735823  	aggcaaacgtttacct 	known	0.00743163930555	0.0185788094836901	
pyrC	1121882-1121897  	gcggaaacgttttcct 	known	0.007723205175205	0.00124152320573334	
glyA/hmpA	2683646-2683661  2683702-2683717  	acgcaaacgattacct cggaaacggatttctt 	known	0.00893136091483071	0.00190803288520095	
gltS/yicE	3826504-3826519  	tggcaaacgtttgctt 	novel	0.009716317022698	0.000116451227065586	
tsx	431376-431391  	acgtaatcgattgcgt 	novel	0.0146334945752044	0.0303697866896625	
b2682	2807520-2807535  	cagcaaccgttttcgt 	novel	0.0183734223256235	0.135884971362996	
ygeW/ygeV	3004071-3004086  	agccaaacgttttcgt 	novel	0.03675850150635	0.028767522918013	
yieH/yieG	3894338-3894353  3894370-3894385  	acggcaacgattgcgt acgaaaacgttaaact 	novel	0.0526654780646526	0.145703958740383	
xseA/guaB	2632144-2632159  	gcgtaaccgattgcat 	known	0.065910122333445	2.51114318177739e-05	
gcvT	3048778-3048793  	acgcaatcgttctctt 	known	0.102282786800443	0.0251390535669386	
ycdO	1081417-1081432  	acgcaaactcttgctt 	novel	0.106515864110086	0.130822459989333	
ydcP	1504735-1504750  	gggaaaactatttcgc 	novel	0.120406093222435	0.102568153485778	
yjhA/fimB	4538425-4538440  	aagcaaacgttcgctt 	novel	0.12518016266925	0.254073213931035	
ascF/ascG	2837448-2837463  2837372-2837387  	gtgaaaccggtttctt aggtgaccggtttcac 	novel	0.13038450106188	0.1086537508849	
carA	29415-29430  	gcgcaagcgttttcca 	known	0.2053207340835	0.00391983369912215	
yfjP	2765484-2765499  	gggaacacgttttccc 	novel	0.232422313907333	0.1743167354305	
asnW	2056188-2056203  	ttgaaatcgtttgctg 	novel	0.266504253113091	0.23769298250627	
yhhQ/yhhP	3606689-3606704  	aggttaacgattgcgt 	novel	0.273424604761286	0.00161868385988561	
yigJ	4005335-4005350  4005507-4005522  	ccgtaaacgtttcccc gcgtaatggtttgggc 	novel	0.274718510755406	0.49814160680657	
rplL	4178089-4178104  	acgcattcgcttacgt 	novel	0.2766439802919	0.135979017919248	
wecD	3972140-3972155  3972113-3972128  	gcgccatcgtgcgcat gggaaaacgccttctt 	novel	0.281877712674581	0.360629123188002	
ydiJ/b1688	1766918-1766933  	agtaaatcgtttgcgt 	novel	0.285053569254103	0.498323531271812	
yfaD	2354777-2354792  	gcgtacacgattccgt 	novel	0.305577232305265	0.259740647459475	
b2340	2454889-2454904  	aagaaaacggtggccg 	novel	0.328789921752686	0.606148153645127	
ntpA	1946744-1946759  	acgcgaatgatttcgt 	novel	0.366284780147	0.577942312453182	
mdoG/ymdD	1108399-1108414  	gtgaaaacggttgcaa 	novel	0.368707394504027	0.10826484822227	
b2611/ffh	2745831-2745846  2745832-2745847  	gtggaaacggttggcc tggaaacggttggccg 	novel	0.377042039950875	0.626444292076452	
b2878	3013767-3013782  	agttaaacgattgcgt 	novel	0.382473329197	0.324270866058326	
ebgA	3220109-3220124  	cggcaatcgtttttgc 	novel	0.391759608022421	0.330819224552267	
rpsJ	3451107-3451122  3450935-3450950  	acgcaagcgtattgct acgaaaatgattactc 	novel	0.421699297473366	0.254549957622072	
yifK	3978419-3978434  	acgaaaacatttgcaa 	novel	0.440654612256857	0.573805703424849	
b0309	323847-323862  	ctgaaaacgggttccc 	novel	0.453280714855256	0.382177857623059	
yhfC/ppiA	3490098-3490113  	tagcaaccgattgcaa 	novel	0.473233908032659	0.641884401561086	
xasA	1568644-1568659  1568625-1568640  	gggacaccgttaccgt cccgaaacgggttcgt 	novel	0.515276276357143	0.459064318936364	
b1757	1837424-1837439  	acgcaaagtttttctc 	novel	0.517760438152941	0.471531827603571	
cytR	4122115-4122130  	gtgaaaacggttacag 	novel	0.5187770170674	0.00142741493186458	
secB	3781801-3781816  	atgccaacgttcacac 	novel	0.522385825011064	0.348169383216761	
purA	4402243-4402258  	aagcaaacggtgattt 	known	0.52327041248717	0.334712311691293	
ybhM	819912-819927  	gcggaagcgttttctg 	novel	0.52462974321875	0.466337549527778	
kch	1308547-1308562  	aagaacacggttgcaa 	novel	0.526480394235	0.313692018900721	
b1240	1294546-1294561  	aagaaaacggctccct 	novel	0.528153911985556	0.491729504262414	
glcB	3121827-3121842  	atctcctcgttttcgc 	novel	0.529078752170172	0.543122840436081	
ytfQ/ppa	4447394-4447409  4447453-4447468  	atgaaagcgattacaa acgcaatctgttacat 	novel	0.53220485542421	0.649129899220269	
adiY	4335749-4335764  	atgaaaacgttgccat 	novel	0.533459381850652	0.4719063762525	
serA	3056510-3056525  	atatgaacgtttgcgt 	novel	0.536080640703214	4.74015799922722e-05