acnA
 
Information for acnA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1331879-1332853
+
CDS
positive transcriptional regulator for cysteine regulon
1333855-1336530
+
CDS
acnA
aconitate hydrase 1
1336594-1337184
-
CDS
GTP cyclohydrolase II
 
Reported regulatory sites for acnA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.888
1333747-1333770
tcctc TTTTATCAATTTGGGTTGTTATCA aatcg
-
0
-
2.564
1333789-1333809
tgttt GTGTTATCTTTAATATTCACC ctgaa
-
0
-
2.018
1333606-1333628
caaca CAAATATGAAATATTGGTCCTGG atggg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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