|
aldA
|
| |
| Information
for aldA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1485259-1486059
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
1486256-1487695
|
+
|
CDS
|
aldA
|
|
aldehyde dehydrogenase; NAD-linked
|
|
1487737-1487988
|
-
|
CDS
|
|
|
glyceraldehyde-3-phosphate dehydrogenase (second fragment)
|
|
| |
Reported regulatory
sites for aldA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
1486197-1486211
|
|
arcA
|
negative response regulator of genes in aerobic pathways (sensors ArcB and CpxA)
|
|
1486140-1486167
|
|
crp
|
cyclic AMP receptor protein
|
|
1486072-1486084
|
|
ihf
|
integration host factor (IHF)
|
|
1486147-1486159
|
|
ihf
|
integration host factor (IHF)
|
|
1486208-1486220
|
|
ihf
|
integration host factor (IHF)
|
|
| |
| Species with
an ortholog: PA EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
0
|
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
| |
Critical
MAP values:
|
p=0.01
|
3.34
|
|
p=0.05
|
2.41
|
|
p=0.1
|
2.01
|
|
p=0.2
|
1.55
|
|
|