apbA

Information for apbA, and also upstream and downstream flanking genes:

Genome coordinates Orientation Gene type Name EcoGene Annotation 442275-442871 - CDS thiJ EG13272 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis 442828-443739 - CDS apbA EG13271 involved in thiamin biosynthesis; alternative pyrimidine biosynthesis 443889-444398 + CDS yajQ EG13613 orf; hypothetical protein

Reported regulatory sites for apbA: Genome coordinates Source Transcription factor Transcription factor annotation

Species with an ortholog: PA SP ST EC VC YP

Predictions with an average map value >= the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment

Predictions with an average map value < the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 1.903 443864-443880 R tgatg CGAAGCATAATACCCGC aaagt - 0 - 1.511 443812-443828 R gacgt ATCCCTTAATTGTGCAT agtcg - 0 - 1.511 443783-443799 R acagc ATGCACAATTAAGGGAT agcct - 0 - 0.812 443765-443782 R gggat AGCCTTATTGAACACCCG gagtg - 0 -

Critical MAP values: p=0.01 5.41 p=0.05 4.01 p=0.1 3.43 p=0.2 2.86

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