araE
 
Information for araE, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2977965-2978657
-
CDS
putative resistance proteins
2978786-2980204
-
CDS
araE
low-affinity L-arabinose transport system proton symport protein
2980519-2981280
-
CDS
2-deoxy-D-gluconate 3-dehydrogenase
 
Reported regulatory sites for araE:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
2980263-2980310
araC
transcriptional regulator for ara operon
2980314-2980346
crp
cyclic AMP receptor protein
 
Species with an ortholog: ST EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.818
2980478-2980497 R
ttatg ACCCTGCCGCATGGCAGGGT ttttt
-
0
-
2.718
2980418-2980435 R
ttatg AAATAATCCATATTAATT atcaa
-
0
-
2.718
2980281-2980298 R
cagca ATTTAATCCATATTTATG ctgtt
araC
18
-
2.120
2980206-2980229 R
ctatg TCTTACTCTCTGCTGGCAGGAAAA aatgg
-
0
-
 
Critical MAP values:
p=0.01
7.59
p=0.05
6.45
p=0.1
5.76
p=0.2
5.04

Click here to go back