arcA
 
Information for arcA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4635747-4637099
+
CDS
tolerance to colicin E2
4637159-4637875
-
CDS
arcA
negative response regulator of genes in aerobic pathways; (sensors; ArcB and CpxA)
4637971-4638111
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for arcA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.196
4638017-4638040 R
accca CGACCAAGCTAATGATGTTGTTGA cgttg
-
0
-
4.196
4637976-4637999 R
gtgca TCAAGAACGCAATTACGTACTTTA gtcat
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.245
4638089-4638111 R
gcctg TTATGTTGCTGTTAAAATGGTTA ggatg
-
0
-
3.245
4637885-4637907 R
tcctg TTTCGATTTAGTTGGCAATTTAG gtagc
-
0
-
2.726
4637908-4637928 R
caggt CAGGGACTTTTGTACTTCCTG tttcg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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