argA
 
Information for argA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2945779-2947122
-
CDS
putative amidase
2947264-2948595
+
CDS
argA
N-acetylglutamate synthase; amino acid acetyltransferase
2948657-2950483
-
CDS
DNA helicase; ATP-dependent dsDNA/ssDNA exonuclease V subunit; ssDNA endonuclease
 
Reported regulatory sites for argA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
2947215-2947232
argR
repressor of arg regulon; cer-mediated site specific recombination
2947236-2947253
argR
repressor of arg regulon; cer-mediated site specific recombination
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.715
2947129-2947151
taata AACGGTAAACATTCTTTTTATAT tcacg
-
0
-
3.715
2947220-2947242
acaga ATAAAAATACACTAATTTCGAAT aatca
argR
20
-
3.135
2947179-2947201
gtcgc TCTCGCATAAAATTTACACTTGC accct
-
0
-
0.993
2947159-2947174
acggc ATTACTGATAAAAAAG tcgct
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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