|
aroA
|
| |
| Information
for aroA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
956876-957964
|
+
|
CDS
|
|
|
3-phosphoserine aminotransferase
|
|
958035-959318
|
+
|
CDS
|
aroA
|
|
5-enolpyruvylshikimate-3-phosphate synthetase
|
|
959463-960251
|
+
|
CDS
|
|
|
putative heat shock protein
|
|
| |
Reported regulatory
sites for aroA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.263
|
957984-958004
|
ttaat CCCCACAGCCAGCCTGTGGGG ttttt
|
-
|
0
|
-
|
|
|
|
|
0.796
|
957963-957984
|
cggtt AATGCCGAAATTTTGCTTAATC cccac
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|