|
aroB
|
| |
| Information
for aroB, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3513658-3514944
|
-
|
CDS
|
|
|
putative membrane protein; interferes with cell division
|
|
3515036-3516124
|
-
|
CDS
|
aroB
|
|
3-dehydroquinate synthase
|
|
3516181-3516903
|
-
|
CDS
|
|
|
shikimate kinase I
|
|
| |
Reported regulatory
sites for aroB:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.532
|
3516167-3516183 R
|
gcaac TAATTCTGGCTTTATAT acact
|
-
|
0
|
-
|
|
|
|
|
1.532
|
3516130-3516146 R
|
tacag TAATTAAGGTGGATGTC gcgtt
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|