asd

Information for asd, and also upstream and downstream flanking genes:

Genome coordinates Orientation Gene type Name EcoGene Annotation 3568949-3571135 - CDS glgB EG10378 1;4-alpha-glucan branching enzyme 3571408-3572511 - CDS asd EG10088 aspartate-semialdehyde dehydrogenase 3572704-3573297 + CDS yhgN EG12941 orf; hypothetical protein

Reported regulatory sites for asd: Genome coordinates Source Transcription factor Transcription factor annotation

Species with an ortholog: HI PA ST EC VC YP

Predictions with an average map value >= the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment

Predictions with an average map value < the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 3.106 3572605-3572620 R ctatc ATTGATTAATTTCACT tgcga - 0 - 2.981 3572623-3572639 R cgcat TACTGATGGCTTCGCTA tcatt - 0 - 2.981 3572565-3572581 R ttgta TGGTGAAAGATGTGCCA agagg - 0 - 2.182 3572643-3572659 R gctaa CAAAGCAGGATAAGTCG catta - 0 - 2.182 3572586-3572602 R acttg CGACTTTGGCTGCTTTT tgtat - 0 -

Critical MAP values: p=0.01 5.41 p=0.05 4.01 p=0.1 3.43 p=0.2 2.86

Click here to go back