|
aspS
|
| |
| Information
for aspS, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1946204-1946656
|
-
|
CDS
|
|
|
dATP pyrophosphohydrolase
|
|
1946774-1948546
|
-
|
CDS
|
aspS
|
|
aspartate tRNA synthetase
|
|
1948823-1949422
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for aspS:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.240
|
1948774-1948790 R
|
acgac AAATTTTGTTAATTTTT atgag
|
-
|
0
|
-
|
|
|
|
|
2.131
|
1948636-1948652 R
|
ccagt ATAATAGCCGCCTTTTT tcatt
|
-
|
0
|
-
|
|
|
|
|
1.439
|
1948656-1948678 R
|
caggc TCTTACGGTGCGGCAGAATTTCC agtat
|
-
|
0
|
-
|
|
|
|
|
1.439
|
1948593-1948615 R
|
ataca GCTAACGCTGCGACTTGGTCACC tgcgc
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|