|
atoD
|
| |
| Information
for atoD, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2319886-2321271
|
+
|
CDS
|
|
|
response regulator of ato; ornithine decarboxylase antizyme (sensor ATOS)
|
|
2321467-2322129
|
+
|
CDS
|
atoD
|
|
acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
|
|
2322129-2322779
|
+
|
CDS
|
|
|
acetyl-CoA:acetoacetyl-CoA transferase beta subunit
|
|
| |
Reported regulatory
sites for atoD:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.305
|
2321375-2321390
|
caatt AGTTAAATAACTAAAT ccaat
|
-
|
0
|
-
|
|
|
|
|
1.005
|
2321285-2321302
|
cttgc TATGCAGAAATTTGCACA gtgcg
|
-
|
0
|
-
|
|
|
|
|
1.005
|
2321304-2321321
|
cacag TGCGCAATTTTCTGCATA gccgc
|
-
|
0
|
-
|
|
|
|
|
0.587
|
2321415-2321434
|
actcc CCTTGCTATTGCCTGACTGT accca
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
3.02
|
|
p=0.05
|
2.31
|
|
p=0.1
|
1.98
|
|
p=0.2
|
1.61
|
|
|