avtA
 
Information for avtA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3735126-3737156
+
CDS
alpha-amylase
3737334-3738587
+
CDS
avtA
alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase; transaminase C
3738738-3739211
-
CDS
orf; hypothetical protein
 
Reported regulatory sites for avtA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.882
3737280-3737297
ccagc AAATGTAGCGTTATTGTT acctt
-
0
-
0.219
3737235-3737258
tgcag GATAAAGCACCGCTCACTCTTCAA cagac
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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