|
b0235
|
| |
| Information
for b0235, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
252709-253161
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
253467-253733
|
+
|
CDS
|
b0235
|
|
orf; hypothetical protein
|
|
253702-254202
|
+
|
CDS
|
|
|
probable peptide chain release factor
|
|
| |
Reported regulatory
sites for b0235:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.901
|
253231-253249
|
aagga GGTAAATCATGACAAATCC tttat
|
-
|
0
|
-
|
|
|
|
|
1.901
|
253305-253323
|
gccct GGATTCGTCTGCCATTTCC tgatt
|
-
|
0
|
-
|
|
|
|
|
1.590
|
253271-253287
|
tgcag ACCTTTCCAGGATTAAT tcttt
|
-
|
0
|
-
|
|
|
|
|
0.052
|
253355-253378
|
taatt CGAGTTGCAGGAAGGCGACAAGCG agtga
|
-
|
0
|
IRU3 (24)
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.82
|
|
p=0.05
|
5.66
|
|
p=0.1
|
5.03
|
|
p=0.2
|
4.36
|
|
|