b0235
 
Information for b0235, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
252709-253161
+
CDS
orf; hypothetical protein
253467-253733
+
CDS
b0235
orf; hypothetical protein
253702-254202
+
CDS
probable peptide chain release factor
 
Reported regulatory sites for b0235:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: PA ST EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.901
253231-253249
aagga GGTAAATCATGACAAATCC tttat
-
0
-
1.901
253305-253323
gccct GGATTCGTCTGCCATTTCC tgatt
-
0
-
1.590
253271-253287
tgcag ACCTTTCCAGGATTAAT tcttt
-
0
-
0.052
253355-253378
taatt CGAGTTGCAGGAAGGCGACAAGCG agtga
-
0
IRU3 (24)
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

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