|
b0967
|
| |
| Information
for b0967, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1027627-1027995
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
1028002-1029105
|
-
|
CDS
|
b0967
|
|
putative oxidoreductase
|
|
1029287-1029565
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for b0967:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.962
|
1029143-1029165 R
|
ccaaa GGGCGCGAAAAATCATTACTTCG tcgcc
|
-
|
0
|
-
|
|
|
|
|
4.103
|
1029122-1029143 R
|
acttc GTCGCCATCCGTGGGTCTTTTC cgggg
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
0.650
|
1029259-1029282 R
|
ttgct GCTCTCCTTATCCTTAATGGACGC gttgc
|
-
|
0
|
-
|
|
|
|
|
0.650
|
1029204-1029227 R
|
caatg ACGCCCATTTCTTTGCATCGACAG aaaag
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|