|
b1327
|
| |
| Information
for b1327, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1387894-1388682
|
-
|
CDS
|
|
|
putative carboxypeptidase
|
|
1388957-1389889
|
-
|
CDS
|
b1327
|
|
orf; hypothetical protein
|
|
1390015-1390914
|
+
|
CDS
|
|
|
putative transcriptional regulator LYSR-type
|
|
| |
Reported regulatory
sites for b1327:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.485
|
1389976-1389991 R
|
ctatt AATCATTTAAATGATA ggtct
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.321
|
1389922-1389939 R
|
taatg ATCAATATCTATAGTGAT atcac
|
-
|
0
|
-
|
|
|
|
|
0.045
|
1389948-1389965 R
|
aatca TGATTTTGGGTCTAATCA actta
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.78
|
|
p=0.05
|
3.24
|
|
p=0.1
|
2.72
|
|
p=0.2
|
2.16
|
|
|