|
b1377
|
| |
| Information
for b1377, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1433209-1433715
|
-
|
CDS
|
|
|
putative filament protein
|
|
1433784-1434917
|
-
|
CDS
|
b1377
|
|
putative outer membrane protein
|
|
1435284-1438808
|
-
|
CDS
|
|
|
putative oxidoreductase; Fe-S subunit
|
|
| |
Reported regulatory
sites for b1377:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.680
|
1435101-1435122 R
|
tagca AATTAAAAGTATAATTTTTATT ttgta
|
-
|
0
|
-
|
|
|
|
|
2.380
|
1435247-1435264 R
|
gatta TCCAATTCTAAAAAAAAA gcccg
|
-
|
0
|
-
|
|
|
|
|
1.974
|
1435075-1435098 R
|
atttt GTATGTATTATCTTCGATACATTC accag
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|