|
b1520
|
| |
| Information
for b1520, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1605370-1606128
|
+
|
CDS
|
|
|
putative enzyme
|
|
1606132-1607097
|
-
|
CDS
|
b1520
|
|
orf; hypothetical protein
|
|
1607253-1608704
|
-
|
CDS
|
|
|
altronate oxidoreductase
|
|
| |
Reported regulatory
sites for b1520:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
0.781
|
1607128-1607143 R
|
cctgc TAATGTTGTAAGCTTG taggt
|
-
|
0
|
-
|
|
|
|
|
0.647
|
1607215-1607236 R
|
cttct GAACCCGGTTTCGACCGGGTTT cttat
|
-
|
0
|
-
|
|
|
|
|
0.059
|
1607173-1607194 R
|
tagtt ACAACATCCTATATGCCTTTAT catta
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.59
|
|
p=0.05
|
6.45
|
|
p=0.1
|
5.76
|
|
p=0.2
|
5.04
|
|
|