|
b1600
|
| |
| Information
for b1600, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1670844-1671173
|
-
|
CDS
|
|
|
possible chaperone
|
|
1671160-1671525
|
-
|
CDS
|
b1600
|
|
possible chaperone
|
|
1671937-1672971
|
+
|
CDS
|
|
|
putative transport protein
|
|
| |
Reported regulatory
sites for b1600:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.480
|
1671774-1671789 R
|
ctacc GAGGACAATTATCATC cgcga
|
-
|
0
|
-
|
|
|
|
|
4.480
|
1671736-1671751 R
|
acact GCGGATAATTGTAATA ttatg
|
-
|
0
|
-
|
|
|
|
|
3.443
|
1671651-1671672 R
|
cacta TCTTGCTCGTAGGTGAGCAGCA ctggc
|
-
|
0
|
-
|
|
|
|
|
3.443
|
1671528-1671549 R
|
taaaa TAATTCTCTTGCAGGAGAAGGA caatg
|
-
|
0
|
-
|
|
|
|
|
2.384
|
1671830-1671851 R
|
gtaaa GAAGTGAAAATATTTTGAGTTA attct
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.66
|
|
p=0.05
|
5.31
|
|
p=0.1
|
4.59
|
|
p=0.2
|
3.95
|
|
|