|
b1624
|
| |
| Information
for b1624, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1700257-1701258
|
+
|
CDS
|
|
|
adenosine deaminase
|
|
1701292-1702371
|
-
|
CDS
|
b1624
|
|
orf; hypothetical protein
|
|
1702973-1703188
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for b1624:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.105
|
1702585-1702608 R
|
aagaa CGATCCAACCTGTTAATTCAATAA gacga
|
-
|
0
|
-
|
|
|
|
|
1.105
|
1702525-1702548 R
|
ttgat CCATTAACTTCAGGGGGTAAATGT tactt
|
-
|
0
|
-
|
|
|
|
|
0.872
|
1702813-1702828 R
|
aaaag AGTAACGCGCTTTACT atccc
|
-
|
0
|
-
|
|
|
|
|
0.630
|
1702792-1702811 R
|
tacta TCCCTGACAATCACCAACAA catcg
|
-
|
0
|
-
|
|
|
|
|
0.630
|
1702648-1702667 R
|
tcagg TGGCTGATAGTTGTCAATGT gactc
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|