|
b1706
|
| |
| Information
for b1706, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1787637-1787828
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
1787832-1789268
|
-
|
CDS
|
b1706
|
|
orf; hypothetical protein
|
|
1789331-1790044
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for b1706:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.693
|
1789311-1789333 R
|
agcga TAACCCTTCTGTTTGCTGGTGTT taaga
|
-
|
0
|
-
|
|
|
|
|
1.380
|
1789287-1789302 R
|
gacga GAGTAACCGTCTACAC tatca
|
-
|
0
|
-
|
|
|
|
|
1.368
|
1789294-1789317 R
|
tttgc TGGTGTTTAAGACGAGAGTAACCG tctac
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|