|
b1841
|
| |
| Information
for b1841, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1921743-1922615
|
-
|
CDS
|
|
|
putative resistance protein
|
|
1922619-1922993
|
-
|
CDS
|
b1841
|
|
orf; hypothetical protein
|
|
1923132-1923362
|
+
|
CDS
|
|
|
DNA polymerase III; theta subunit
|
|
| |
Reported regulatory
sites for b1841:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.725
|
1923007-1923030 R
|
ttatg CTCTGTAAAAAAGTTATTACAAAA aggaa
|
-
|
0
|
-
|
|
|
|
|
4.560
|
1923051-1923070 R
|
agccg GAATTGATGATCCTCGACTC agaca
|
-
|
0
|
-
|
|
|
|
|
1.747
|
1923023-1923045 R
|
agaca TTAGACAAGGTTATGCTCTGTAA aaaag
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|