|
b1971
|
| |
| Information
for b1971, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2036978-2037391
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
2037500-2038504
|
+
|
CDS
|
b1971
|
|
putative reductase
|
|
2038505-2039140
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for b1971:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.279
|
2037391-2037406
|
agtta ATGCATAAATATGTAA aagca
|
-
|
0
|
-
|
|
|
|
|
1.279
|
2037407-2037422
|
tgtaa AAGCAGATCTCTGCTA ctgtt
|
-
|
0
|
-
|
|
|
|
|
0.329
|
2037443-2037459
|
ctccc TGACAGATTAACAGTAA acggc
|
-
|
0
|
-
|
|
|
|
|
0.329
|
2037467-2037483
|
ggctc TTGCTGGCTAACGACAA aaaag
|
-
|
0
|
-
|
|
|
|
|
0.009
|
2037424-2037447
|
gctac TGTTAGGGAGGACACTCCCTGACA gatta
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|