|
b2379
|
| |
| Information
for b2379, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2493599-2494585
|
+
|
CDS
|
|
|
putative heat shock protein
|
|
2495077-2496315
|
-
|
CDS
|
b2379
|
|
putative aminotransferase
|
|
2496691-2498388
|
+
|
CDS
|
|
|
putative sensor protein
|
|
| |
Reported regulatory
sites for b2379:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
8.293
|
2496339-2496355 R
|
gcgtc GCTCGGACGGTCCGGGC gctaa
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.790
|
2496382-2496402 R
|
agaca GAAATTAATCAGGCTATTTTC aaaac
|
-
|
0
|
-
|
|
|
|
|
2.584
|
2496457-2496478 R
|
gcgca GATAAATTTCCTGTTTTTAAAG cagag
|
-
|
0
|
-
|
|
|
|
|
2.584
|
2496415-2496436 R
|
aacgt CATTAATAAAATGTTCTAAAAC gctgg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.66
|
|
p=0.05
|
5.31
|
|
p=0.1
|
4.59
|
|
p=0.2
|
3.95
|
|
|