betT
 
Information for betT, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
327971-328558
-
CDS
probably transcriptional repressor of bet genes
328687-330720
+
CDS
betT
high-affinity choline transport
331595-332683
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for betT:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
328605-328625
betI
probably transcriptional repressor of bet genes
 
Species with an ortholog: HI PA EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.426
328601-328624
aagcg GTTATTGATTGGACGTTCAATATA aaatg
betI
20
-
3.426
328634-328657
gtgtc TTAATTGTTACGAATTTGATTTTA aatag
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
0.001
328583-328600
agcgg TGTTTATCTATTAAAGCG gttat
-
0
-
 
Critical MAP values:
p=0.01
3.55
p=0.05
2.64
p=0.1
2.26
p=0.2
1.86

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