cadB
 
Information for cadB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4354048-4356195
-
CDS
lysine decarboxylase 1
4356275-4357609
-
CDS
cadB
transport of lysine/cadaverine
4357974-4359512
-
CDS
transcriptional activator of cad operon
 
Reported regulatory sites for cadB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.512
4357893-4357916 R
gttcc TGTTGGTATAATATGTTGCGGCAA tttat
-
0
-
2.411
4357854-4357876 R
cataa TTTTTATTACATAAATTTAACCA gagaa
-
0
-
2.411
4357798-4357820 R
ttaaa TGTTTATCTTTTCATGATATCAA cttgc
-
0
-
0.901
4357699-4357722 R
aatct TTAGGATTAATCCTTTTTTCGTGA gtaat
-
0
-
0.901
4357649-4357672 R
tctgg TCAGGAAATAGTTATACATCATGA cccgg
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

Click here to go back