cadC
 
Information for cadC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4356275-4357609
-
CDS
transport of lysine/cadaverine
4357974-4359512
-
CDS
cadC
transcriptional activator of cad operon
4360129-4360204
-
tRNA
Phenylalanine tRNA
 
Reported regulatory sites for cadC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST VC EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.706
4359591-4359607 R
tgcat TCACCAATAATATGTAA ataaa
-
0
-
1.706
4359568-4359584 R
taaac CCATCTATAGATGGTAA aaata
-
0
-
1.409
4359712-4359728 R
acatt TTTCTTTGGCAAAGATG atgaa
-
0
-
1.063
4359541-4359556 R
gttgt GGCAATTATCATTGCA tcatt
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

Click here to go back