citA
 
Information for citA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
650021-651166
-
CDS
citrate lyase synthetase (citrate (pro-3S)-lyase ligase
651458-653116
+
CDS
citA
putative sensor-type protein
653085-653765
+
CDS
sequence similarity to Shigella regulator
 
Reported regulatory sites for citA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
7.002
651274-651296
tggtt TTTTATTTATTTAATGATTTTAA gtttt
-
0
-
7.002
651343-651365
agtga TTTAATTGATTTAATGAATAAAA tttgc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.985
651213-651230
tcgct ATACATCCTAAGGAGTAT ttcgg
-
0
-
2.765
651236-651259
ttcgg CGTGAAATTTTGATTTATTTCACA tagag
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

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