|
cmk
|
| |
| Information
for cmk, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
959463-960251
|
+
|
CDS
|
|
|
putative heat shock protein
|
|
960424-961107
|
+
|
CDS
|
cmk
|
|
cytidylate kinase
|
|
961218-962891
|
+
|
CDS
|
|
|
30S ribosomal subunit protein S1
|
|
| |
Reported regulatory
sites for cmk:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.839
|
960318-960338
|
atctg AATACAGACAAAACTGGTTTT tgcac
|
-
|
0
|
-
|
|
|
|
|
1.750
|
960286-960302
|
gccag CCCGCTATAATTGCGCA ataaa
|
-
|
0
|
-
|
|
|
|
|
1.750
|
960368-960384
|
gcgtc GGCGCGTATAATGCGCG cggtt
|
-
|
0
|
-
|
|
|
|
|
1.255
|
960249-960268
|
gtaag TAAATCATTGTCATCTTTCG ggctg
|
-
|
0
|
-
|
|
|
|
|
1.255
|
960393-960412
|
ttatg TTAACGGTACGCCTGTTTTA aggag
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|