|
cmtB
|
| |
| Information
for cmtB, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3075490-3076878
|
-
|
CDS
|
|
|
PTS system; mannitol-specific enzyme II component; cryptic
|
|
3076906-3077349
|
-
|
CDS
|
cmtB
|
|
PTS system; mannitol-specific enzyme II component; cryptic
|
|
3077663-3079654
|
-
|
CDS
|
|
|
transketolase 1 isozyme
|
|
| |
Reported regulatory
sites for cmtB:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.922
|
3077555-3077571 R
|
ttgta GATCACAAATATTTATA tgcaa
|
-
|
0
|
-
|
|
|
|
|
2.922
|
3077474-3077490 R
|
atatc TATAACTCAATGTTATA taaga
|
-
|
0
|
-
|
|
|
|
|
1.361
|
3077565-3077580 R
|
taagg CGTGTTGTAGATCACA aatat
|
-
|
0
|
-
|
|
|
|
|
1.361
|
3077521-3077536 R
|
aatta TGTAATATGCATCACG atatg
|
-
|
0
|
-
|
|
|
|
|
0.283
|
3077607-3077624 R
|
ctttt TTATTACCTTGATATGTC cgttt
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|