|
cpsG
|
| |
| Information
for cpsG, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2118182-2119576
|
-
|
CDS
|
|
|
putative colanic acid biosynthsis UDP-glucose lipid carrier transferase
|
|
2119631-2121001
|
-
|
CDS
|
cpsG
|
|
phosphomannomutase
|
|
2121106-2122542
|
-
|
CDS
|
|
|
mannose-1-phosphate guanyltransferase
|
|
| |
Reported regulatory
sites for cpsG:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.536
|
2121017-2121039 R
|
cgctt CGGTCAGGGCCAACTATTGCCTG aaaaa
|
-
|
0
|
-
|
|
|
|
|
1.268
|
2121048-2121065 R
|
taaat AACGACAAAAATAAAATT ggccg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|