csgD
 
Information for csgD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1101375-1101764
-
CDS
curli production assembly/transport component; 2nd curli operon
1101769-1102419
-
CDS
csgD
putative 2-component transcriptional regulator for 2nd curli operon
1103174-1103629
+
CDS
minor curlin subunit precursor; similar ro CsgA
 
Reported regulatory sites for csgD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.011
1102485-1102508 R
cacac AGCAGTGCAACATCTGTCAGTACT tctgg
-
0
-
3.017
1102447-1102465 R
tttag AGGCAGCTGTCAGGTGTGC gatca
-
0
-
2.454
1102620-1102641 R
ttaac ATTTTAATATAACGAGTTACAT ttagt
-
0
-
2.454
1102421-1102442 R
cgatc AATAAAAAAAGCGGGGTTTCAT catgt
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

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