cspA
 
Information for cspA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3717107-3717397
+
CDS
orf; hypothetical protein
3717678-3717890
+
CDS
cspA
cold shock protein 7.4; transcriptional activator of hns
3718309-3718830
+
CDS
IS150 hypothetical protein
 
Reported regulatory sites for cspA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.098
3717523-3717543
aacgg TTTGACGTACAGACCATTAAA gcagt
-
0
-
2.793
3717559-3717577
aaggc AAGTCCCTTCAAGAGTTAT cgttg
-
0
-
2.469
3717622-3717641
aaaat CTGTAAAGCACGCCATATCG ccgaa
-
0
-
 
Critical MAP values:
p=0.01
7.59
p=0.05
6.45
p=0.1
5.76
p=0.2
5.04

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