cspD
 
Information for cspD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
919570-921516
+
CDS
putative ATP-binding component of a transport system
921589-921813
-
CDS
cspD
cold shock protein
922136-922456
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for cspD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.217
921966-921981 R
aactg CTTCAAATTTTTGATT catac
-
0
-
2.217
921904-921919 R
cccta ATTCTCTAAATTGTAT ttcta
-
0
-
2.045
922032-922053 R
actcc ACATGATAGATAACTATCATCT atcgt
-
0
-
2.045
921831-921852 R
ttatt CCATCTTACTTGTATAAGATTT gcgaa
-
0
-
1.945
921875-921897 R
tctag AGTTGGCGAGGTTTTGAACAGCC ccctc
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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