csrA
 
Information for csrA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2816575-2816667
-
tRNA
Serine tRNA3
2816983-2817168
-
CDS
csrA
carbon storage regulator; controls glycogen synthesis; gluconeogenesis; cell size and surface properties
2817403-2820033
-
CDS
alanyl-tRNA synthetase
 
Reported regulatory sites for csrA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.594
2817195-2817217 R
ataat GCCGGGATACAGAGAGACCCGAC tcttt
-
0
-
4.118
2817282-2817304 R
ctaaa CTTAGGTTTAACAGAATGTAATG ccatg
-
0
-
4.118
2817170-2817192 R
gactc TTTTAATCTTTCAAGGAGCAAAG aatgc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.642
2817302-2817325 R
ggttg AAGTTGTGTATATCGGCTAAACTT aggtt
-
0
-
3.642
2817240-2817263 R
gatgt AATGTGTTTGTCATTGCTTACTTT ttggc
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

Click here to go back