cysB
 
Information for cysB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1329072-1331669
+
CDS
DNA topoisomerase type I; omega protein
1331879-1332853
+
CDS
cysB
positive transcriptional regulator for cysteine regulon
1333855-1336530
+
CDS
aconitate hydrase 1
 
Reported regulatory sites for cysB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
1331778-1331817
cysB
positive transcriptional regulator for cysteine regulon
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.089
1331765-1331785
aggct ATAAATGATATAGTGGTTATA gttag
cysB
8
-
3.089
1331797-1331817
acctt TTTTATTATTAAATCGTATTA gtcac
cysB
21
-
1.762
1331673-1331692
aacct TTAATTCTGTCAGGTTTTTA taaac
-
0
-
0.527
1331698-1331721
taaac AAAGGGTCGCGAAAGCGGCCCTTT tttat
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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