cytR
 
Information for cytR, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4119960-4120919
-
CDS
essential cell division protein
4121011-4122036
-
CDS
cytR
regulator for deo operon; udp; cdd; tsx; nupC; and nupG
4122192-4124390
-
CDS
primosomal protein N'(= factor Y)(putative helicase)
 
Reported regulatory sites for cytR:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4122143-4122164
crp
cyclic AMP receptor protein
4122113-4122144
cytR
regulator for deo operon udp cdd tsx nupC and nupG
 
Species with an ortholog: ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.169
4122128-4122149 R
ttcat CACACTTTTCATGAAAATTCTG taacc
cytR
crp
17
7
-
5.408
4122167-4122183 R
gctca CGATGCGAGGCGGATCG aaaaa
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.320
4122088-4122109 R
gcgct ATCTGCTAAAAATGTTGCCGAT gtgaa
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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