dapB
 
Information for dapB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
27293-28207
+
CDS
orf; hypothetical protein
28374-29195
+
CDS
dapB
dihydrodipicolinate reductase
29651-30799
+
CDS
carbamoyl-phosphate synthetase; glutamine (small) subunit
 
Reported regulatory sites for dapB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.337
28237-28260
gtcat TCATCGACTCATGCCTTTCACTGA tatcc
-
0
-
1.337
28277-28300
gttta TCATTAATTTCTAATTATCAGCGT ttttg
-
0
-
0.563
28327-28350
tgcgc TGGTTACTCTGAAAACGGTCTATG caaat
-
0
-
0.134
28207-28230
tcgta ACCTGTCACATGTTATTGGCATGC agtca
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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