deoC
 
Information for deoC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4613084-4614634
-
CDS
orf; hypothetical protein
4614892-4615671
+
CDS
deoC
2-deoxyribose-5-phosphate aldolase
4615798-4617120
+
CDS
thymidine phosphorylase
 
Reported regulatory sites for deoC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4614796-4614817
crp
cyclic AMP receptor protein
4614743-4614764
crp
cyclic AMP receptor protein
4614768-4614785
cytR
regulator for deo operon udp cdd tsx nupC and nupG
4614832-4614847
deoR
transcriptional repressor for deo operon tsx nupG
4614233-4614248
deoR
transcriptional repressor for deo operon tsx nupG
4613954-4613969
deoR
transcriptional repressor for deo operon tsx nupG
 
Species with an ortholog: SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.127
4614832-4614847
gtaga TGTTAGAATACTAACA aactc
deoR
16
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.807
4614744-4614763
tgaat TATTTGAACCAGATCGCATT acagt
crp
20
-
3.807
4614797-4614816
cctta ATTGTGATGTGTATCGAAGT gtgtt
crp
20
-
1.058
4614661-4614684
aggtg ATGCGCCATTGTAAGAAGTTTCGT gatgt
-
0
-
 
Critical MAP values:
p=0.01
6.03
p=0.05
4.63
p=0.1
3.98
p=0.2
3.37

Click here to go back