fdhF
 
Information for fdhF, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4294015-4294704
-
CDS
orf; hypothetical protein
4294798-4296945
-
CDS
fdhF
selenopolypeptide subunit of formate dehydrogenase H
4297143-4298609
-
CDS
putative enzyme
 
Reported regulatory sites for fdhF:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4297080-4297107
fhlA
formate hydrogen-lyase transcriptional activator for fdhF hyc and hyp operons
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.602
4297083-4297103 R
tcgtt TCGTCACGTCAAAACTGACGA cagcc
fhlA
21
-
1.602
4297007-4297027 R
gaatg ACCCCACATAAAATGTGGCAT aaaag
-
0
-
1.233
4296958-4296973 R
gtatg CGTGATTTGATTAACT ggagc
-
0
-
1.173
4296991-4297006 R
ggcat AAAAGATGCATACTGT agtcg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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