|
ffh
|
| |
| Information
for ffh, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2743957-2744205
|
-
|
CDS
|
|
|
30S ribosomal subunit protein S16
|
|
2744454-2745815
|
-
|
CDS
|
ffh
|
|
GTP-binding export factor binds to signal sequence; GTP and RNA
|
|
2745907-2746773
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for ffh:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.001
|
2745841-2745860 R
|
gatga TGTGTCGCGATTGCGGCCAA ccgtt
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.583
|
2745871-2745891 R
|
acgcc TTCATGTTATACTGCGGCAAA atact
|
-
|
0
|
-
|
|
|
|
|
1.570
|
2745855-2745876 R
|
actgc GGCAAAATACTGATGATGTGTC gcgat
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|