fimA
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4539605-4540201
|
+
|
CDS
|
recombinase involved in phase variation; regulator for fimA
|
||
|
4540683-4541231
|
+
|
CDS
|
fimA
|
major type 1 subunit fimbrin (pilin)
|
|
|
4541188-4541835
|
+
|
CDS
|
fimbrial protein
|
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
4540422-4540507
|
lrp
|
regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
|
|
|
4540204-4540231
|
ihf
|
integration host factor (IHF)
|
|
|
4540331-4540354
|
ihf
|
integration host factor (IHF)
|
|
|
4540242-4540269
|
fimB/fimE
|
recombinase involved in phase variation; regulator for fimA
|
|
|
4540540-4540577
|
fimB/fimE
|
recombinase involved in phase variation; regulator for fimA
|
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.939
|
4540286-4540309
|
ttacg TATTTTTTCTCAAGCATAAAAATA ttaaa
|
-
|
0
|
-
|
 |
 |
 |
|
1.939
|
4540349-4540372
|
atgta AATTATTTCTATTGTAAATTAATT tcaca
|
ihf
|
6
|
-
|
|
|
|
|
1.666
|
4540203-4540225
|
ttgat TTAACTTATTGATAATAAAGTTA aaaaa
|
ihf
|
22
|
-
|
 |
 |
|
|
0.119
|
4540395-4540411
|
tatgt AAAGCTAACGTTTCTGT ggctc
|
-
|
0
|
-
|
 |
 |
|
Critical
MAP values:
|