fliC
 
Information for fliC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1999093-1999812
-
CDS
flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons
2000133-2001629
-
CDS
fliC
flagellar biosynthesis; flagellin; filament structural protein
2001895-2003301
+
CDS
flagellar biosynthesis; filament capping protein; enables filament assembly
 
Reported regulatory sites for fliC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
2001636-2001683
ihf
integration host factor (IHF)
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.342
2001733-2001752 R
aaatg GCTGTTTTTGAAAAAAATTC taaag
-
0
-
2.080
2001819-2001839 R
tctga ATTGCGCAAAGTTTACGTTTA attgt
-
0
-
1.951
2001722-2001741 R
tttga AAAAAATTCTAAAGGTTGTT ttacg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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