fliF
 
Information for fliF, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2010722-2011036
-
CDS
flagellar biosynthesis; basal-body component; possibly at (MS-ring)-rod junction
2011251-2012909
+
CDS
fliF
flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein
2012902-2013897
+
CDS
flagellar biosynthesis; component of motor switching and energizing; enabling rotation and determining its direction
 
Reported regulatory sites for fliF:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: PA ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.477
2011153-2011174
gcaca AATAATGGGAGCGTCAATTTTT cgagt
-
0
-
2.589
2011190-2011208
gaccc GGGAGTGAGTCTTGTTCCA ctttg
-
0
-
2.395
2011110-2011127
gcaac AAAAAAACGGGTTTATTG gcgga
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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