gapC_1
 
Information for gapC_1, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1487737-1487988
-
CDS
glyceraldehyde-3-phosphate dehydrogenase (second fragment)
1487985-1488389
-
CDS
gapC_1
glyceraldehyde 3-phosphate dehydrogenase C; interrupted
1488890-1489456
+
CDS
cytochrome b(561)
 
Reported regulatory sites for gapC_1:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.045
1488711-1488731 R
tgagt AAAGTTGGTATTAACGGTTTT ggtcg
-
0
-
2.414
1488583-1488605 R
acctg CTGAAACATGATTCAAACTACGG accat
-
0
-
2.098
1488537-1488554 R
ttacg GAAGATTCACTTATCGTT gatgg
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

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