gatR_1
 
Information for gatR_1, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2166734-2167633
+
CDS
orf; hypothetical protein
2167715-2168161
-
CDS
gatR_1
split galactitol utilization operon repressor; interrupted
2168249-2168557
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for gatR_1:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
0.203
2168172-2168190 R
tcaga CCGTTATTCTCGACAGCGG aagta
-
0
-
0.058
2168224-2168245 R
acctc TGACTGAGAGTTTACTCACTTA gccgc
-
0
-
 
Critical MAP values:
p=0.01
7.59
p=0.05
6.45
p=0.1
5.76
p=0.2
5.04

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