gcvA
 
Information for gcvA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2939258-2939653
-
CDS
orf; hypothetical protein
2939672-2940589
-
CDS
gcvA
positive regulator of gcv operon
2940940-2941170
-
CDS
orf; hypothetical protein
 
Reported regulatory sites for gcvA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
2940642-2940661
gcvA
positive regulator of gcv operon
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.398
2940653-2940675 R
gacaa TTTATAATGGCTCAGATTAAAAA aacta
gcvA
9
-
5.154
2940895-2940916 R
aaaaa AGCACCGCAATTAGGCGGTGCT acatt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.904
2940728-2940749 R
gcatt CCGATAAAACTTTTCGTTCCGG ctcag
-
0
-
2.904
2940695-2940716 R
aagtg CCGCCACTATAGGTATTTGCTG gtaga
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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