|
ggt
|
| |
| Information
for ggt, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3582390-3582674
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
3582712-3584454
|
-
|
CDS
|
ggt
|
|
gamma-glutamyltranspeptidase
|
|
3584574-3585014
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for ggt:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.125
|
3584457-3584474 R
|
gcccc TTAATCTCTGGAGAATAA cgatg
|
-
|
0
|
-
|
|
|
|
|
1.189
|
3584501-3584522 R
|
acaaa ACGATGATTAATTCAGAGTTAT atacc
|
-
|
0
|
-
|
|
|
|
|
0.709
|
3584524-3584542 R
|
ttaag TTTACTCGCTTCCCGACAA aacga
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.66
|
|
p=0.05
|
5.31
|
|
p=0.1
|
4.59
|
|
p=0.2
|
3.95
|
|
|